Unknown

Dataset Information

0

Next-generation sequencing yields the complete mitochondrial genome of Pterygoplichthys pardalis (Loricariidae; Siluriformes).

ABSTRACT: In this study, we report the complete mitochondrial genome of Pterygoplichthys pardalis has derived by next-generation sequencing. The complete mitochondrial genome of P. pardalis contains 16,425 bp encompassing 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one control region (D-loop). The base composition is A 31.79%, C 26.89%, G 14.63%, and T 26.69%, and its gene arrangement is consistent with mitochondrial genomes derived from other representatives of Loricariidae. A phylogenetic tree of 24 Loricariidae species constructed based on the 13 coding genes shows that P. pardalis is clustered with other Pterygoplichthys genus. It suggests that the molecular classification results confirm its external morphological characteristics. These results have reference value for the further study of phylogenetic relationship, taxonomic classification, and phylogeography of Loricariidae.

SUBMITTER: Xia W 

PROVIDER: S-EPMC8530479 | biostudies-literature | 2021

REPOSITORIES: biostudies-literature

Json Xml
altmetric image

Publications

Next-generation sequencing yields the complete mitochondrial genome of <i>Pterygoplichthys pardalis</i> (Loricariidae; Siluriformes).

Xia Wangxiao W   Jiang Hui H   Ge Jinghao J   Cheng Jianghong J   Liu Peng P   Gou Xingchun X  

Mitochondrial DNA. Part B, Resources 20211020 11

In this study, we report the complete mitochondrial genome of <i>Pterygoplichthys pardalis</i> has derived by next-generation sequencing. The complete mitochondrial genome of <i>P. pardalis</i> contains 16,425 bp encompassing 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one control region (D-loop). The base composition is A 31.79%, C 26.89%, G 14.63%, and T 26.69%, and its gene arrangement is consistent with mitochondrial genomes derived from other representatives  ...[more]

Similar Datasets

Unknown Next-generation sequencing yields the complete mitochondrial genome of <i>Corydoras sterbai</i> (Teleostei, Siluriformes, Callichthyidae, Corydoradinae).
| S-EPMC7707845 | biostudies-literature
Unknown Next-generation sequencing yields the complete mitochondrial genome of <i>Microhyla beilunensis</i> (Anura: Microhylidae).
| S-EPMC7782835 | biostudies-literature
Genomics Pterygoplichthys pardalis
| PRJNA1165483 | ENA
Genomics Pterygoplichthys pardalis
| PRJNA1165882 | ENA
Unknown Next-generation sequencing yields complete mitochondrial genome assembly of peaceful betta fish, <i>Betta imbellis</i> (Teleostei: Osphronemidae).
| S-EPMC7759254 | biostudies-literature
Unknown Next-generation sequencing yields the complete chloroplast genome of <i>Abies kawakamii</i>.
| S-EPMC7510649 | biostudies-literature
Unknown Next-generation sequencing yields the complete mitochondrial genome of <i>Rhodoprasina callantha</i> (Lepidoptera: Sphingidae) and its evolutionary status.
| S-EPMC9377226 | biostudies-literature
Unknown Next-generation sequencing yields the complete mitochondrial genome of the endangered Milos viper <i>Macrovipera schweizeri</i> (Reptilia, Viperidae).
| S-EPMC7800557 | biostudies-literature
Unknown Next-generation sequencing yields the first complete mitochondrial genome of the ruby dragonet <i>Synchiropus sycorax</i> (Syngnathiformes, Callionymidae).
| S-EPMC7748508 | biostudies-literature
Unknown Mitochondrial transcripts and associated heteroplasmies of Ancistrus spp. (Siluriformes: Loricariidae).
| S-EPMC4631843 | biostudies-literature