TAGOPSIN: collating taxa-specific gene and protein functional and structural information.

ABSTRACT:

Background

The wealth of biological information available nowadays in public databases has triggered an unprecedented rise in multi-database search and data retrieval for obtaining detailed information about key functional and structural entities. This concerns investigations ranging from gene or genome analysis to protein structural analysis. However, the retrieval of interconnected data from a number of different databases is very often done repeatedly in an unsystematic way.

Results

Here, we present TAxonomy, Gene, Ontology, Protein, Structure INtegrated (TAGOPSIN), a command line program written in Java for rapid and systematic retrieval of select data from seven of the most popular public biological databases relevant to comparative genomics and protein structure studie

SUBMITTER: Bundhoo E 

PROVIDER: S-EPMC8541804 | biostudies-literature | 2021 Oct

REPOSITORIES: biostudies-literature