Browse
Submit Data
Databases
API
Help

Dataset Information

48 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Closed Genome Sequence of Yavru, a Novel Arthrobacter globiformis Phage.

ABSTRACT: We characterized the complete genome sequence of actinobacteriophage Yavru (Siphoviridae), a cluster FE bacteriophage infecting Arthrobacter globiformis NRRL B-2979; it was 89.5% identical to cluster FE phage Whytu, with a capsid width of 50 nm and a tail length of 90 nm. The genome was 15,193 bp in length, with 23 predicted protein-coding genes.

SUBMITTER: Ulker M

PROVIDER: S-EPMC8582311 | biostudies-literature | 2021 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Closed Genome Sequence of Yavru, a Novel Arthrobacter globiformis Phage.

Ulker Meliha M Siddiqui Fardeen A FA Gerton Thomas J TJ Anastasi Rachel E RE Conroy Dylan J DJ Edwards Ethan G EG Laizure Isabelle E IE Reynolds Joshua D JD Duggan Kelsie K Johnson Kristen C KC MacLea Kyle S KS

Microbiology resource announcements 20211111 45

We characterized the complete genome sequence of actinobacteriophage Yavru (Siphoviridae), a cluster FE bacteriophage infecting Arthrobacter globiformis NRRL B-2979; it was 89.5% identical to cluster FE phage Whytu, with a capsid width of 50 nm and a tail length of 90 nm. The genome was 15,193 bp in length, with 23 predicted protein-coding genes. ...[more]

PMID: 34761957

Similar Datasets

Genome Sequence of Arthrobacter globiformis Phage KeAlii from Hawai'i.

Project description:Here, we report the genome sequence of bacteriophage KeAlii, a Siphoviridae that infects Arthrobacter globiformis strain B-2979, from Honolulu, Hawai'i. The 41,850-bp genome contains 66 predicted protein-coding genes and 1 gene that encodes a tRNA for tryptophan. Genome comparisons suggest KeAlii is closely related to actinobacteriophage Adolin.

| S-EPMC9387248 | biostudies-literature

Genome sequence and annotation of Arthrobacter globiformis phage Vulpecula (AS1) isolated from soil in Dahlonega, Georgia.

Project description:Vulpecula, a temperate bacteriophage collected from soil in Dahlonega, Georgia using host Arthrobacter globiformis, is an AS1 subcluster virus of 37,766 bp (67.7% GC). Genome annotation suggests 64 open reading frames, no predicted tRNA genes, and ~98% sequence similarity to AS1 phages Ruchi (from GA) and Jamun (New Hampshire).

| S-EPMC10927666 | biostudies-literature

Genome Sequence of Bacteriophage Adumb2043, Isolated from Arthrobacter globiformis in Southern Colorado.

Project description:We report the discovery and genome sequence of phage Adumb2043, a siphovirus infecting Arthrobacter globiformis, B2979-SEA. Adumb2043 was isolated from soil collected in Colorado Springs, Colorado. The genome has a length of 43,100 bp and contains 68 predicted protein-coding genes and no tRNA genes. Adumb2043 is related to actinobacteriophages Elezi and London.

| S-EPMC8515885 | biostudies-literature

Genome Sequence of Arthrobacter sp. Phage Scuttle.

Project description:Arthrobacter phage Scuttle was isolated by enrichment from a dry soil sample (collected in Upper Darby, Pennsylvania) on host Arthrobacter sp. ATCC 21022. The genome of this phage is 43,729 bp long, has a GC content of 61.1%, and has 61 annotated protein-coding genes.

| S-EPMC7317111 | biostudies-literature

Genome Sequence and Annotation of Bacteriophage Tokki Isolated on Arthrobacter globiformis B-2979.

Project description:Arthrobacter phage Tokki is a siphovirus isolated from soil in River Falls, Wisconsin. The genome contains 57,652-bp encoding 98 proteins, of which 23 were assigned a function. Tokki's genome structure and content is typical of other AU2 subcluster phages, except for the lack of an identifiable acetyltransferase.

| S-EPMC9583803 | biostudies-literature

Complete genome sequence of bacteriophage MrAaronian isolated from an Arthrobacter globiformis culture.

Project description:Arthrobacteriophage MrAaronian contains a 54,509 bp DNA genome with 87 predicted protein-coding genes. MrAaronian has siphovirus morphology and was collected from a flowerbed soil sample in Poughkeepsie, NY, and isolated on an Arthrobacter globiformis B-2979 culture. MrAaronian has > 99% nucleotide identity with cluster AW arthrobacteriophages Michelle, Stayer, Sloopyjoe, and StarLord.

| S-EPMC10720457 | biostudies-literature

Characterization and Genome Sequence of Arthrobacter Phage Iter.

Project description:Arthrobacter phage Iter was isolated in North Georgia. Its genome is 43,963 bp with 70 open reading frames (ORFs) and a GC content of 67.4%. It shares 89.11% nucleotide identity with Arthrobacter phage Phives. Actinobacteriophages that share over 50% nucleotide identity are sorted into clusters, with Iter in cluster AZ.

| S-EPMC9584298 | biostudies-literature

Genome Sequence of Arthrobacter Phage NathanVaag.

Project description:We report the genome sequence of bacteriophage NathanVaag, an actinobacteriophage isolated from soil in El Paso, Texas, that infects Arthrobacter sp. strain ATCC 21022. The 49,645-bp genome contains 73 predicted protein-coding genes. Based on gene content similarity to phages in the Actinobacteriophage Database, NathanVaag is assigned to phage cluster AO1.

| S-EPMC9671025 | biostudies-literature

Complete Genome Sequence of Arthrobacter Phage ScienceWizSam.

Project description:Phage ScienceWizSam was isolated from soil using Arthrobacter sp. strain ATCC 21022. The phage genome is 58,217 bp with 96 open reading frames (ORFs). All of the ORFs are transcribed rightwards. Based on gene content similarity, ScienceWizSam is assigned to phage subcluster AU1.

| S-EPMC9753647 | biostudies-literature

Draft Genome Sequence of Arthrobacter globiformis mrc11, an Antimicrobial Agent Isolated from a Khangkhui Cave Deposit.

Project description:Arthrobacter globiformis mrc11 was isolated from a Khangkhui cave deposit. Here, we report the draft genome sequence of this phylogenetically novel organism, which has a genome size of 4.89 Mb, a 65.9% GC content, and 4,657 predicted open reading frames that can be translated. This study will give insights into the mechanisms of the strain's antimicrobial activity.

| S-EPMC6424210 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data