Dataset Information

Exploring the potential of machine learning for simulations of urban ozone variability.

ABSTRACT: Machine learning (ML) has emerged as a powerful technique in the Earth system science, nevertheless, its potential to model complex atmospheric chemistry remains largely unexplored. Here, we applied ML to simulate the variability in urban ozone (O₃) over Doon valley of the Himalaya. The ML model, trained with past variations in O₃ and meteorological conditions, successfully reproduced the independent O₃ data (r² ~ 0.7). Model performance is found to be similar when the variation in major precursors (CO and NO_x) were included in the model, instead of the meteorology. Further the inclusion of both precursors and meteorology improved the performance significantly (r² = 0.86) and the model could also capture the outliers, which are crucial for air quality assessments. We suggest that in absence of high-resolution measurements, ML modeling has profound implications for unraveling the feedback between pollution and meteorology in the fragile Himalayan ecosystem.

SUBMITTER: Ojha N

PROVIDER: S-EPMC8602617 | biostudies-literature | 2021 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Exploring the potential of machine learning for simulations of urban ozone variability.

Ojha Narendra N Girach Imran I Sharma Kiran K Sharma Amit A Singh Narendra N Gunthe Sachin S SS

Scientific reports 20211118 1

Machine learning (ML) has emerged as a powerful technique in the Earth system science, nevertheless, its potential to model complex atmospheric chemistry remains largely unexplored. Here, we applied ML to simulate the variability in urban ozone (O3) over Doon valley of the Himalaya. The ML model, trained with past variations in O3 and meteorological conditions, successfully reproduced the independent O3 data (r2 ~ 0.7). Model performance is found to be ...[more]

PMID: 34795336

Similar Datasets

Project description:The differentiation of induced pluripotent stem cells (iPSCs) into diverse functional cell types provides a promising solution to support drug discovery, disease modeling, and regenerative medicine. However, functional cell differentiation is currently limited by the substantial line-to-line and batch-to-batch variability, which severely impede the progress of scientific research and the manufacturing of cell products. For instance, iPSC-to-cardiomyocyte (CM) differentiation is vulnerable with great sensitivity to inappropriate doses of CHIR99021 (CHIR) that are applied in the initial stage of mesoderm differentiation. Here, by harnessing live-cell bright-field imaging and machine learning (ML), we realize real-time cell recognition in the entire differentiation process, e.g., CMs, cardiac progenitor cells (CPCs), iPSC clones, and even misdifferentiated cells. This enables non-invasive prediction of differentiation efficiency, purification of ML-recognized CMs and CPCs for reducing cell contamination, early assessment of the CHIR dose for correcting the misdifferentiation trajectory, and evaluation of initial iPSC colonies for controlling the start point of differentiation, all of which provide a more invulnerable differentiation method with resistance to variability. Moreover, with the established ML models as a readout for the chemical screen, we identify a CDK8 inhibitor to further improve the cell resistance to the overdose of CHIR. Together, this study indicates that artificial intelligence is able to guide and iteratively optimize iPSC differentiation to achieve consistently high efficiency across cell lines and batches, providing a better understanding and rational modulation of the differentiation process for functional cell manufacturing in biomedical applications. With the assistance of RNA sequencing, we transcriptomically characterize the image-recognized CPCs (IR-CPCs), the cells treated with different CHIR doses at stage I, iPSC-CM treated with or without BI-1347, and cells treated with or without BI-1347 at stage I.

Project description:BackgroundFrozen shoulder (FS) and Dupuytren's disease (DD) are two closely related diseases, but the mechanism of their interaction is unknown. Our study sought to elucidate the molecular mechanism of these two diseases through shared gene and protein interactions.MethodsGSE75152 and GSE140731 data were downloaded from the Gene Expression Omnibus (GEO) database, and shared genes between FS and DD were selected by using R packages. Then, we used Cytoscape software and the STRING database to produce a protein-protein interaction (PPI) network. Important interaction networks and hub genes were selected through MCODE and cytoHubba algorithms. To explore the potential mechanisms of the development of the two diseases, the hub genes were further enriched by GO and KEGG analyses. We predicted the transcription factors (TFs) of hub genes with Transcriptional Regulatory Relationships Unraveled by Sentence-based Text mining (TRRUST). Moreover, we identified candidate genes for FS with DD with cytoHubba and machine learning algorithms. Finally, we analyzed the role of immunocyte infiltration in FS and constructed the relationship between candidate genes and immunocytes in FS.ResultsWe identified a total of 321 shared genes. The results of GO and KEGG enrichment of shared genes showed that extracellular matrix and collagen fibril tissue play a certain role in the occurrence and development of disease. According to the importance of genes, we constructed the key PPI network of shared genes and the top 15 hub genes for FS with DD. Then, we predicted that five TFs are related to the hub genes and are highly expressed in the FS group. Machine learning results show that the candidate genes POSTN and COL11A1 may be key for FS with DD. Finally, immune cell infiltration revealed the disorder of immunocytes in FS patients, and expression of candidate genes can affect immunocyte infiltration.ConclusionWe identified a PPI network, 15 hub genes, and two immune-related candidate genes (POSTN and COL11A1) using bioinformatics analysis and machine learning algorithms. These genes have the potential to serve as diagnostic genes for FS in DD patients. Furthermore, our study reveals disorder of immunocytes in FS.

Dataset Information

Exploring the potential of machine learning for simulations of urban ozone variability.

Publications

Exploring the potential of machine learning for simulations of urban ozone variability.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets