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Characterization of Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan complete chloroplast genome.

ABSTRACT: Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan, a tree species with promising afforestation potential in northern China. Here, we assembled and annotated the complete chloroplast (cp) genome of P. densiflora var. zhangwuensis using the Oxford Nanopore sequencing technology. The cp genome was 119,725 bp in length, exhibiting a typical quadripartite structure with a large single-copy (LSC: 65,552 bp) and a small single-copy (SSC: 53,183 bp) separated by a pair of inverted repeats regions (IRA and IRB: each of 495 bp) region. The overall GC content is 37.3%. The genome was predicted to encode 112 distinct genes, including 72 protein-coding, 36 tRNA, and four rRNA genes. Maximum-likelihood (ML) phylogenetic for cp genome sequences of 18 Pinaceae species revealed that P. densiflora var. zhangwuensis was closely related to Pinus sylvestris.

SUBMITTER: Xia Q

PROVIDER: S-EPMC8635610 | biostudies-literature | 2021

REPOSITORIES: biostudies-literature

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Characterization of Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan complete chloroplast genome.

Xia Qijing Q Hao Chunying C Zhang Baixi B El-Kassaby Yousry A YA Li Wei W

Mitochondrial DNA. Part B, Resources 20211129 12

Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan, a tree species with promising afforestation potential in northern China. Here, we assembled and annotated the complete chloroplast (cp) genome of P. densiflora var. zhangwuensis using the Oxford Nanopore sequencing technology. The cp genome was 119,725 bp in length, exhibiting a typical quadripartite structure with a large single-copy (LSC: 65,552 bp) and a small single-copy (SSC: 53,183 bp) separated by ...[more]

PMID: 34869897

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