Analysis of CcGASA family members in Citrus clementina (Hort. ex Tan.) by a genome-wide approach.

ABSTRACT: The Gibberellic Acid Stimulated Arabidopsis (GASA) proteins were investigated in the study to help understand their possible roles in fruit trees, particularly in Citrus. A total of 18 CcGASA proteins were identified and characterized in Citrus clementina via a genome-wide approach. It was shown that the CcGASA proteins structurally shared a conserved GASA domain but varied considerably in primary sequences and motif compositions. Thus, they could be classified into three major phylogenetic groups, G1~G3, and two groups, G1 and G3 could be further classified into subgroups. The cis- elements on all CcGASA promoters were identified and categorized, and the associated transcription factors were predicted. In addition, the possible interactions between the CcGASA proteins and other proteins w

SUBMITTER: Wu T 

PROVIDER: S-EPMC8638133 | biostudies-literature | 2021 Dec

REPOSITORIES: biostudies-literature