GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data.

ABSTRACT:

Background

The interpretation of results from transcriptome profiling experiments via RNA sequencing (RNA-seq) can be a complex task, where the essential information is distributed among different tabular and list formats-normalized expression values, results from differential expression analysis, and results from functional enrichment analyses. A number of tools and databases are widely used for the purpose of identification of relevant functional patterns, yet often their contextualization within the data and results at hand is not straightforward, especially if these analytic components are not combined together efficiently.

Results

We developed the GeneTonic software package, which serves as a comprehensive toolkit for streamlining the interpretation of functional enrich

SUBMITTER: Marini F 

PROVIDER: S-EPMC8697502 | biostudies-literature | 2021 Dec

REPOSITORIES: biostudies-literature