ChromoMap: an R package for interactive visualization of multi-omics data and annotation of chromosomes.

ABSTRACT:

Background

The recent advancements in high-throughput sequencing have resulted in the availability of annotated genomes, as well as of multi-omics data for many living organisms. This has increased the need for graphic tools that allow the concurrent visualization of genomes and feature-associated multi-omics data on single publication-ready plots.

Results

We present chromoMap, an R package, developed for the construction of interactive visualizations of chromosomes/chromosomal regions, mapping of any chromosomal feature with known coordinates (i.e., protein coding genes, transposable elements, non-coding RNAs, microsatellites, etc.), and chromosomal regional characteristics (i.e. genomic feature density, gene expression, DNA methylation, chromatin modifications, etc.) of or

SUBMITTER: Anand L 

PROVIDER: S-EPMC8753883 | biostudies-literature | 2022 Jan

REPOSITORIES: biostudies-literature