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Standards recommendations for the Earth BioGenome Project.


ABSTRACT: A global international initiative, such as the Earth BioGenome Project (EBP), requires both agreement and coordination on standards to ensure that the collective effort generates rapid progress toward its goals. To this end, the EBP initiated five technical standards committees comprising volunteer members from the global genomics scientific community: Sample Collection and Processing, Sequencing and Assembly, Annotation, Analysis, and IT and Informatics. The current versions of the resulting standards documents are available on the EBP website, with the recognition that opportunities, technologies, and challenges may improve or change in the future, requiring flexibility for the EBP to meet its goals. Here, we describe some highlights from the proposed standards, and areas where additional challenges will need to be met.

SUBMITTER: Lawniczak MKN 

PROVIDER: S-EPMC8795494 | biostudies-literature | 2022 Jan

REPOSITORIES: biostudies-literature

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Standards recommendations for the Earth BioGenome Project.

Lawniczak Mara K N MKN   Durbin Richard R   Flicek Paul P   Lindblad-Toh Kerstin K   Wei Xiaofeng X   Archibald John M JM   Baker William J WJ   Belov Katherine K   Blaxter Mark L ML   Marques Bonet Tomas T   Childers Anna K AK   Coddington Jonathan A JA   Crandall Keith A KA   Crawford Andrew J AJ   Davey Robert P RP   Di Palma Federica F   Fang Qi Q   Haerty Wilfried W   Hall Neil N   Hoff Katharina J KJ   Howe Kerstin K   Jarvis Erich D ED   Johnson Warren E WE   Johnson Rebecca N RN   Kersey Paul J PJ   Liu Xin X   Lopez Jose Victor JV   Myers Eugene W EW   Pettersson Olga Vinnere OV   Phillippy Adam M AM   Poelchau Monica F MF   Pruitt Kim D KD   Rhie Arang A   Castilla-Rubio Juan Carlos JC   Sahu Sunil Kumar SK   Salmon Nicholas A NA   Soltis Pamela S PS   Swarbreck David D   Thibaud-Nissen Françoise F   Wang Sibo S   Wegrzyn Jill L JL   Zhang Guojie G   Zhang He H   Lewin Harris A HA   Richards Stephen S  

Proceedings of the National Academy of Sciences of the United States of America 20220101 4


A global international initiative, such as the Earth BioGenome Project (EBP), requires both agreement and coordination on standards to ensure that the collective effort generates rapid progress toward its goals. To this end, the EBP initiated five technical standards committees comprising volunteer members from the global genomics scientific community: Sample Collection and Processing, Sequencing and Assembly, Annotation, Analysis, and IT and Informatics. The current versions of the resulting st  ...[more]

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