COBREXA.jl: constraint-based reconstruction and exascale analysis.

ABSTRACT:

Summary

COBREXA.jl is a Julia package for scalable, high-performance constraint-based reconstruction and analysis of very large-scale biological models. Its primary purpose is to facilitate the integration of modern high performance computing environments with the processing and analysis of large-scale metabolic models of challenging complexity. We report the architecture of the package, and demonstrate how the design promotes analysis scalability on several use-cases with multi-organism community models.

Availability and implementation

https://doi.org/10.17881/ZKCR-BT30.

Supplementary information

Supplementary data are available at Bioinformatics online.

SUBMITTER: Kratochvil M 

PROVIDER: S-EPMC8796381 | biostudies-literature | 2022 Jan

REPOSITORIES: biostudies-literature