CBMOS: a GPU-enabled Python framework for the numerical study of center-based models.

ABSTRACT:

Background

Cell-based models are becoming increasingly popular for applications in developmental biology. However, the impact of numerical choices on the accuracy and efficiency of the simulation of these models is rarely meticulously tested. Without concrete studies to differentiate between solid model conclusions and numerical artifacts, modelers are at risk of being misled by their experiments' results. Most cell-based modeling frameworks offer a feature-rich environment, providing a wide range of biological components, but are less suitable for numerical studies. There is thus a need for software specifically targeted at this use case.

Results

We present CBMOS, a Python framework for the simulation of the center-based or cell-centered model. Contrary to other implementat

SUBMITTER: Mathias S 

PROVIDER: S-EPMC8805507 | biostudies-literature | 2022 Jan

REPOSITORIES: biostudies-literature