SwCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution.

ABSTRACT:

Motivation

Complex biological tissues are often a heterogeneous mixture of several molecularly distinct cell subtypes. Both subtype compositions and subtype-specific (STS) expressions can vary across biological conditions. Computational deconvolution aims to dissect patterns of bulk tissue data into subtype compositions and STS expressions. Existing deconvolution methods can only estimate averaged STS expressions in a population, while many downstream analyses such as inferring co-expression networks in particular subtypes require subtype expression estimates in individual samples. However, individual-level deconvolution is a mathematically underdetermined problem because there are more variables than observations.

Results

We report a sample-wise Convex Analysis of Mixtures

SUBMITTER: Chen L 

PROVIDER: S-EPMC8826012 | biostudies-literature | 2022 Feb

REPOSITORIES: biostudies-literature