SkewDB, a comprehensive database of GC and 10 other skews for over 30,000 chromosomes and plasmids.

ABSTRACT: GC skew denotes the relative excess of G nucleotides over C nucleotides on the leading versus the lagging replication strand of eubacteria. While the effect is small, typically around 2.5%, it is robust and pervasive. GC skew and the analogous TA skew are a localized deviation from Chargaff's second parity rule, which states that G and C, and T and A occur with (mostly) equal frequency even within a strand. Different bacterial phyla show different kinds of skew, and differing relations between TA and GC skew. This article introduces an open access database ( https://skewdb.org ) of GC and 10 other skews for over 30,000 chromosomes and plasmids. Further details like codon bias, strand bias, strand lengths and taxonomic data are also included. The SkewDB can be used to generate or verify hyp

SUBMITTER: Hubert B 

PROVIDER: S-EPMC8941118 | biostudies-literature | 2022 Mar

REPOSITORIES: biostudies-literature