Unknown

Dataset Information

0

Diagnosis and prognosis of breast cancer by high-performance serum metabolic fingerprints.


ABSTRACT: High-performance metabolic analysis is emerging in the diagnosis and prognosis of breast cancer (BrCa). Still, advanced tools are in demand to deliver the application potentials of metabolic analysis. Here, we used fast nanoparticle-enhanced laser desorption/ionization mass spectrometry (NPELDI-MS) to record serum metabolic fingerprints (SMFs) of BrCa in seconds, achieving high reproducibility and low consumption of direct serum detection without treatment. Subsequently, machine learning of SMFs generated by NPELDI-MS functioned as an efficient readout to distinguish BrCa from non-BrCa with an area under the curve of 0.948. Furthermore, a metabolic prognosis scoring system was constructed using SMFs with effective prediction performance toward BrCa (P < 0.005). Finally, we identified a biomarker panel of seven metabolites that were differentially enriched in BrCa serum and their related pathways. Together, our findings provide an efficient serum metabolic tool to characterize BrCa and highlight certain metabolic signatures as potential diagnostic and prognostic factors of diseases including but not limited to BrCa.

SUBMITTER: Huang Y 

PROVIDER: S-EPMC8944253 | biostudies-literature | 2022 Mar

REPOSITORIES: biostudies-literature

altmetric image

Publications

Diagnosis and prognosis of breast cancer by high-performance serum metabolic fingerprints.

Huang Yida Y   Du Shaoqian S   Liu Jun J   Huang Weiyi W   Liu Wanshan W   Zhang Mengji M   Li Ning N   Wang Ruimin R   Wu Jiao J   Chen Wei W   Jiang Mengyi M   Zhou Tianhao T   Cao Jing J   Yang Jing J   Huang Lin L   Gu An A   Niu Jingyang J   Cao Yuan Y   Zong Wei-Xing WX   Wang Xin X   Liu Jun J   Qian Kun K   Wang Hongxia H  

Proceedings of the National Academy of Sciences of the United States of America 20220318 12


High-performance metabolic analysis is emerging in the diagnosis and prognosis of breast cancer (BrCa). Still, advanced tools are in demand to deliver the application potentials of metabolic analysis. Here, we used fast nanoparticle-enhanced laser desorption/ionization mass spectrometry (NPELDI-MS) to record serum metabolic fingerprints (SMFs) of BrCa in seconds, achieving high reproducibility and low consumption of direct serum detection without treatment. Subsequently, machine learning of SMFs  ...[more]

Similar Datasets

| S-SCDT-10_1038-S44321-024-00169-0 | biostudies-other
| S-EPMC11628598 | biostudies-literature
| S-EPMC11425863 | biostudies-literature
| S-EPMC11497029 | biostudies-literature
| S-EPMC10942223 | biostudies-literature
| S-EPMC11848555 | biostudies-literature
2025-05-30 | GSE267692 | GEO
2025-04-27 | GSE293092 | GEO
| S-EPMC10787061 | biostudies-literature
| S-EPMC9101355 | biostudies-literature