Dataset Information

The structural shift and collaboration capacity in GenBank Networks: A longitudinal study.

ABSTRACT: Metadata in scientific data repositories such as GenBank contain links between data submissions and related publications. As a new data source for studying collaboration networks, metadata in data repositories compensate for the limitations of publication-based research on collaboration networks. This paper reports the findings from a GenBank metadata analytics project. We used network science methods to uncover the structures and dynamics of GenBank collaboration networks from 1992-2018. The longitudinality and large scale of this data collection allowed us to unravel the evolution history of collaboration networks and identify the trend of flattening network structures over time and optimal assortative mixing range for enhancing collaboration capacity. By incorporating metadata from the data production stage with the publication stage, we uncovered new characteristics of collaboration networks as well as developed new metrics for assessing the effectiveness of enablers of collaboration-scientific and technical human capital, cyberinfrastructure, and science policy.

SUBMITTER: Qin J

PROVIDER: S-EPMC9012484 | biostudies-literature | 2022

REPOSITORIES: biostudies-literature

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The structural shift and collaboration capacity in GenBank Networks: A longitudinal study.

Qin Jian J Hemsley Jeff J Bratt Sarah E SE

Quantitative science studies 20220412 1

Metadata in scientific data repositories such as GenBank contain links between data submissions and related publications. As a new data source for studying collaboration networks, metadata in data repositories compensate for the limitations of publication-based research on collaboration networks. This paper reports the findings from a GenBank metadata analytics project. We used network science methods to uncover the structures and dynamics of GenBank collaboration networks from 1992-2018. The lo ...[more]

PMID: 35434639

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Project description:This paper explores the evolution of research collaboration networks in the 'stakeholder theory and management' (STM) discipline and identifies the longitudinal effect of co-authorship networks on research performance, i.e., research productivity and citation counts. Research articles totaling 6,127 records from 1989 to 2020 were harvested from the Web of Science Database and transformed into bibliometric data using Bibexcel, followed by applying social network analysis to compare and analyze scientific collaboration networks at the author, institution and country levels. This work maps the structure of these networks across three consecutive sub-periods (t1: 1989-1999; t2: 2000-2010; t3: 2011-2020) and explores the association between authors' social network properties and their research performance. The results show that authors collaboration network was fragmented all through the periods, however, with an increase in the number and size of cliques. Similar results were observed in the institutional collaboration network but with less fragmentation between institutions reflected by the increase in network density as time passed. The international collaboration had evolved from an uncondensed, fragmented and highly centralized network, to a highly dense and less fragmented network in t3. Moreover, a positive association was reported between authors' research performance and centrality and structural hole measures in t3 as opposed to ego-density, constraint and tie strength in t1. The findings can be used by policy makers to improve collaboration and develop research programs that can enhance several scientific fields. Central authors identified in the networks are better positioned to receive government funding, maximize research outputs and improve research community reputation. Viewed from a network's perspective, scientists can understand how collaborative relationships influence research performance and consider where to invest their decision and choices.

Project description:BackgroundEvidence-based practice in medicine and social policy relies heavily on evidence synthesis. To translate evidence into practical guidelines for low- and middle-income countries, local expertise is essential. The objectives of this study are to assess the change in capacity for conducting evidence synthesis in Africa and to identify key African institutions for regional capacity-building. We take on a network perspective, considering that the position of an institution in the African evidence ecosystem is one constituent of its research capacity.MethodsWe systematically identified 3548 evidence synthesis publications between 2008 and 2019 with at least one author in Africa from the Web of Science Core Collection. These articles involved 3769 institutions. Longitudinal institution-level collaboration network data were constructed based on co-authorship information. We used social network analysis to examine the institutions' connectivity and tendency for intra- and interregional collaboration. We also identified the degree- and betweenness-central African institutions and explored the structure and composition of their local network neighbourhoods.ResultsThe number of African institutions involved in evidence synthesis has increased substantially over the last decade, from 31 in 2008 to 521 in 2019, and so has the number of evidence synthesis publications with authors in Africa. African institutions in the evidence ecosystem have also become more connected during this period. Although the amount of intercontinental collaboration continues to exceed that of regional collaboration, the tendency for African institutions to collaborate with partners in Africa is increasing. We identified seven institutions-in South Africa, Egypt and Uganda-as central to the collaboration networks between 2008 and 2019, all of whom showed a tendency to collaborate across sectors.ConclusionThe development of more regionally based network-building initiatives would help to foster communities of practice and inter-institutional collaboration, strengthening regional research capacity. Moreover, the analysis in this study adds depth beyond a simple bibliometric analysis and illustrates that network analysis could provide a useful tool to evaluate the effectiveness of capacity-building strategies and programmes in the future.

Dataset Information

The structural shift and collaboration capacity in GenBank Networks: A longitudinal study.

Publications

The structural shift and collaboration capacity in GenBank Networks: A longitudinal study.

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