Network Reconstruction and Modelling Made Reproducible with moped.

ABSTRACT: Mathematical modeling of metabolic networks is a powerful approach to investigate the underlying principles of metabolism and growth. Such approaches include, among others, differential-equation-based modeling of metabolic systems, constraint-based modeling and metabolic network expansion of metabolic networks. Most of these methods are well established and are implemented in numerous software packages, but these are scattered between different programming languages, packages and syntaxes. This complicates establishing straight forward pipelines integrating model construction and simulation. We present a Python package moped that serves as an integrative hub for reproducible construction, modification, curation and analysis of metabolic models. moped supports draft reconstruction of models

SUBMITTER: Saadat NP 

PROVIDER: S-EPMC9032245 | biostudies-literature | 2022 Mar

REPOSITORIES: biostudies-literature