Conformational dynamics of amyloid-β (16-22) peptide in aqueous ionic liquids.

ABSTRACT: Molecular dynamics simulations of amyloid-β (16-22) peptide dimer in water as well as at two different experimentally studied concentrations of hydrated ionic liquids (ILs), ethylammonium mesylate (EAM), ethylammonium nitrate (EAN), and triethylammonium mesylate (TEAM), were carried out employing an umbrella sampling method. We used the average Ψ angle of the peptide backbone as the reaction coordinate to observe the conformational changes of a peptide dimer. Secondary structural element values were calculated for the peptide dimer along the reaction coordinate to see the transition of the peptide dimer between β-sheet and α-helix conformations. We observe the β-sheet conformation as the global minimum on the free energy surfaces in both EAM and EAN ILs at both the concentrations an

SUBMITTER: Dasari S 

PROVIDER: S-EPMC9056671 | biostudies-literature | 2020 Sep

REPOSITORIES: biostudies-literature