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Comment on 'Solution growth and thermal treatment of crystals lead to two new forms of 2-((2,6-dimethylphenyl)amino)benzoic acid' by R. Hu, Y. Zhoujin, M. Liu, M. Zhang, S. Parkin, P. Zhou, J. Wang, F. Yu and S. Long, RSC Adv., 2018, 8, 15459.

ABSTRACT: The study mentioned in the title of this comment article reports on two new polymorphic forms of 2-((2,6-dimethylphenyl)amino)benzoic acid, one with new X-ray diffraction data showing its crystal structure, and the other without. However, our investigation suggests that the newly reported crystal structure (Form II) is in fact the same structure previously reported (Form I), differing in how the structure refinement was performed. Herein, we demonstrated from the raw crystallographic data of Form I that both structures are the same, which invalidates the discovery of the new polymorph. In this comment article, we discuss point by point the findings reported by Long et al., as well as the fact that the report of the other polymorph (Form III) could present a broader investigation in order to assess its existence.

SUBMITTER: Salbego PRS

PROVIDER: S-EPMC9071002 | biostudies-literature | 2019 Sep

REPOSITORIES: biostudies-literature

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Comment on 'Solution growth and thermal treatment of crystals lead to two new forms of 2-((2,6-dimethylphenyl)amino)benzoic acid' by R. Hu, Y. Zhoujin, M. Liu, M. Zhang, S. Parkin, P. Zhou, J. Wang, F. Yu and S. Long, <i>RSC Adv.</i>, 2018, <b>8</b>, 15459.

Salbego Paulo R S PRS Orlando Tainára T Martins Marcos A P MAP

RSC advances 20190911 48

The study mentioned in the title of this comment article reports on two new polymorphic forms of 2-((2,6-dimethylphenyl)amino)benzoic acid, one with new X-ray diffraction data showing its crystal structure, and the other without. However, our investigation suggests that the newly reported crystal structure (Form II) is in fact the same structure previously reported (Form I), differing in how the structure refinement was performed. Herein, we demonstrated from the raw crystallographic data of For ...[more]

PMID: 35530468

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Project description:BackgroundAcanthocephala is a clade of obligate endoparasites whose mitochondrial genomes (mitogenomes) and evolution remain relatively poorly understood. Previous studies reported that atp8 is lacking from acanthocephalan mitogenomes, and that tRNA genes often have nonstandard structures. Heterosentis pseudobagri (Arhythmacanthidae) is an acanthocephalan fish endoparasite for which no molecular data are currently available, and biological information is unavailable in the English language. Furthermore, there are currently no mitogenomes available for Arhythmacanthidae.MethodsWe sequenced its mitogenome and transcriptome, and conducted comparative mitogenomic analyses with almost all available acanthocephalan mitogenomes.ResultsThe mitogenome had all genes encoded on the same strand and unique gene order in the dataset. Among the 12 protein-coding genes, several genes were highly divergent and annotated with difficulty. Moreover, several tRNA genes could not be identified automatically, so we had to identify them manually via a detailed comparison with orthologues. As common in acanthocephalans, some tRNAs lacked either the TWC arm or the DHU arm, but in several cases, we annotated tRNA genes only on the basis of the conserved narrow central segment comprising the anticodon, while the flanking 5' and 3' ends did not exhibit any resemblance to orthologues and they could not be folded into a tRNA secondary structure. We corroborated that these are not sequencing artefacts by assembling the mitogenome from transcriptomic data. Although this phenomenon was not observed in previous studies, our comparative analyses revealed the existence of highly divergent tRNAs in multiple acanthocephalan lineages.ConclusionsThese findings indicate either that multiple tRNA genes are non-functional or that (some) tRNA genes in (some) acanthocephalans might undergo extensive posttranscriptional tRNA processing which restores them to more conventional structures. It is necessary to sequence mitogenomes from yet unrepresented lineages and further explore the unusual patterns of tRNA evolution in Acanthocephala.

Dataset Information

Comment on 'Solution growth and thermal treatment of crystals lead to two new forms of 2-((2,6-dimethylphenyl)amino)benzoic acid' by R. Hu, Y. Zhoujin, M. Liu, M. Zhang, S. Parkin, P. Zhou, J. Wang, F. Yu and S. Long, RSC Adv., 2018, 8, 15459.

Publications

Comment on 'Solution growth and thermal treatment of crystals lead to two new forms of 2-((2,6-dimethylphenyl)amino)benzoic acid' by R. Hu, Y. Zhoujin, M. Liu, M. Zhang, S. Parkin, P. Zhou, J. Wang, F. Yu and S. Long, <i>RSC Adv.</i>, 2018, <b>8</b>, 15459.

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