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Functional and structural characterization of interactions between opposite subunits in HCN pacemaker channels.


ABSTRACT: Hyperpolarization-activated and cyclic nucleotide (HCN) modulated channels are tetrameric cation channels. In each of the four subunits, the intracellular cyclic nucleotide-binding domain (CNBD) is coupled to the transmembrane domain via a helical structure, the C-linker. High-resolution channel structures suggest that the C-linker enables functionally relevant interactions with the opposite subunit, which might be critical for coupling the conformational changes in the CNBD to the channel pore. We combined mutagenesis, patch-clamp technique, confocal patch-clamp fluorometry, and molecular dynamics (MD) simulations to show that residue K464 of the C-linker is relevant for stabilizing the closed state of the mHCN2 channel by forming interactions with the opposite subunit. MD simulations revealed that in the K464E channel, a rotation of the intracellular domain relative to the channel pore is induced, which is similar to the cAMP-induced rotation, weakening the autoinhibitory effect of the unoccupied CL-CNBD region. We suggest that this CL-CNBD rotation is considerably involved in activation-induced affinity increase but only indirectly involved in gate modulation. The adopted poses shown herein are in excellent agreement with previous structural results.

SUBMITTER: Kondapuram M 

PROVIDER: S-EPMC9085832 | biostudies-literature | 2022 May

REPOSITORIES: biostudies-literature

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Functional and structural characterization of interactions between opposite subunits in HCN pacemaker channels.

Kondapuram Mahesh M   Frieg Benedikt B   Yüksel Sezin S   Schwabe Tina T   Sattler Christian C   Lelle Marco M   Schweinitz Andrea A   Schmauder Ralf R   Benndorf Klaus K   Gohlke Holger H   Kusch Jana J  

Communications biology 20220509 1


Hyperpolarization-activated and cyclic nucleotide (HCN) modulated channels are tetrameric cation channels. In each of the four subunits, the intracellular cyclic nucleotide-binding domain (CNBD) is coupled to the transmembrane domain via a helical structure, the C-linker. High-resolution channel structures suggest that the C-linker enables functionally relevant interactions with the opposite subunit, which might be critical for coupling the conformational changes in the CNBD to the channel pore.  ...[more]

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