DeSP: a systematic DNA storage error simulation pipeline.

ABSTRACT:

Background

Using DNA as a storage medium is appealing due to the information density and longevity of DNA, especially in the era of data explosion. A significant challenge in the DNA data storage area is to deal with the noises introduced in the channel and control the trade-off between the redundancy of error correction codes and the information storage density. As running DNA data storage experiments in vitro is still expensive and time-consuming, a simulation model is needed to systematically optimize the redundancy to combat the channel's particular noise structure.

Results

Here, we present DeSP, a systematic DNA storage error Simulation Pipeline, which simulates the errors generated from all DNA storage stages and systematically guides the optimization of encoding redun

SUBMITTER: Yuan L 

PROVIDER: S-EPMC9116035 | biostudies-literature | 2022 May

REPOSITORIES: biostudies-literature