Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of the Type Strain Citrobacter rodentium DSM 16636.

ABSTRACT: The type strain Citrobacter rodentium DSM 16636 was characterized in 1995. This species is widely used in rodents to study the virulence of locus-of-enterocyte-effacement-type pathogens, such as enterohemorrhagic Escherichia coli. The type strain had not been sequenced yet. Here, we report the closed genome (5.3 Gbp) and its plasmid (39.3 kbp).

SUBMITTER: Wahl A

PROVIDER: S-EPMC9119075 | biostudies-literature | 2022 May

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence of the Type Strain Citrobacter rodentium DSM 16636.

Wahl Anika A Neuhaus Klaus K

Microbiology resource announcements 20220405 5

The type strain Citrobacter rodentium DSM 16636 was characterized in 1995. This species is widely used in rodents to study the virulence of locus-of-enterocyte-effacement-type pathogens, such as enterohemorrhagic Escherichia coli. The type strain had not been sequenced yet. Here, we report the closed genome (5.3 Gbp) and its plasmid (39.3 kbp). ...[more]

PMID: 35380454

Similar Datasets

Complete Genome Sequence of Citrobacter rodentium Strain DBS100.

Project description:Citrobacter rodentium strain DBS100 causes an infection of the intestines in mice. It provides an important model for human gastrointestinal pathogens, such as enteropathogenic and enterohemorrhagic Escherichia coli, which cause life-threatening infections. To identify the genetic determinants that are common across the enteropathogenic bacteria, we sequenced the DBS100 genome.

| S-EPMC6588040 | biostudies-literature

Complete Genome Sequence of the Citrobacter freundii Type Strain.

Project description:Citrobacter freundii is a species of facultative anaerobic Gram-negative bacteria of the family Enterobacteriaceae The complete genome is composed of a single chromosomal circle of 4,957,773 bp with a G+C content of 52%.

| S-EPMC7206489 | biostudies-literature

Complete Genome Sequence of the Type Strain Aliivibrio fischeri DSM 507.

Project description:The complete genome sequence of the type strain Aliivibrio fischeri comb. nov. DSM 507 is presented. The genome consists of two circular chromosomes comprising 2,970,859 bp (chromosome 1) and 1,532,347 bp (chromosome 2) with GC contents of 38.94 and 37.13%, respectively.

| S-EPMC9753721 | biostudies-literature

Complete Genome Sequence of Francisella halioticida Type Strain DSM 23729 (FSC1005).

Project description:Here, we announce the complete genome sequence of the Francisella halioticida type strain DSM 23729 (FSC1005), isolated from a diseased cultured giant abalone in Japan in 2005. The genome is composed of a 2,197,430-bp-long circular chromosome, with a G+C content of 31.2%.

| S-EPMC7484064 | biostudies-literature

Complete Genome Sequence of the Clostridium difficile Type Strain DSM 1296T.

Project description:In this study, we sequenced the complete genome of the Clostridium difficile type strain DSM 1296(T). A combination of single-molecule real-time (SMRT) and Illumina sequencing technology revealed the presence of one chromosome and two extrachromosomal elements, the bacteriophage phiCDIF1296T and a putative plasmid-like structure harboring genes of another bacteriophage.

| S-EPMC4599105 | biostudies-literature

Complete Genome Sequence of Citrobacter koseri Strain MPUCK001.

Project description:Citrobacter koseri, an aerobic Gram-negative bacterium, is isolated from the human skin and intestinal tract. Here, we report the complete genome sequence of Citrobacter koseri strain MPUCK001, which has a 4.9-Mbp genome, containing 4,536 protein-coding sequences.

| S-EPMC7729419 | biostudies-literature

Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216(T).

Project description:Bacillus smithii is a facultatively anaerobic, thermophilic bacterium able to use a variety of sugars that can be derived from lignocellulosic feedstocks. Being genetically accessible, it is a potential new host for biotechnological production of green chemicals from renewable resources. We determined the complete genomic sequence of the B. smithii type strain DSM 4216(T), which consists of a 3,368,778 bp chromosome (GenBank accession number CP012024.1) and a 12,514 bp plasmid (GenBank accession number CP012025.1), together encoding 3880 genes. Genome annotation via RAST was complemented by a protein domain analysis. Some unique features of B. smithii central metabolism in comparison to related organisms included the lack of a standard acetate production pathway with no apparent pyruvate formate lyase, phosphotransacetylase, and acetate kinase genes, while acetate was the second fermentation product.

| S-EPMC4995803 | biostudies-literature

Complete Genome Sequence and Annotation of the Paracoccus pantotrophus Type Strain DSM 2944.

Project description:Paracoccus spp. are metabolically versatile alphaproteobacteria able to perform heterotrophic and chemoautotrophic growth. This study describes the whole-genome sequence of the Paracoccus pantotrophus type strain DSM 2944 (ATCC 35512, LMD 82.5, GB17). The genome sequence revealed the presence of a complete phaZ phaC phaP phaR gene cluster related to polyhydroxyalkanoate metabolism.

| S-EPMC6940293 | biostudies-literature

Complete Genome Sequence of Carnobacterium gilichinskyi Strain WN1359T (DSM 27470T).

Project description:We report the complete genome sequence of Carnobacterium gilichinskyi strain WN1359, previously isolated from Siberian permafrost and capable of growth under cold (0°C), anoxic, CO2-dominated, low-pressure (0.7-kPa) conditions in a simulation of the Mars atmosphere.

| S-EPMC3869332 | biostudies-literature

Complete Genome Sequences of Two Citrobacter rodentium Bacteriophages, CR8 and CR44b.

Project description:The complete genomes of two virulent phages infecting Citrobacter rodentium are reported here for the first time. Both bacteriophages were isolated from local sewage treatment plant effluents. Genome analyses revealed a close relationship between both phages and allowed their classification as members of the Autographivirinae subfamily in the T7-like genus.

| S-EPMC4038870 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data