Dataset Information

Genetic Structure of Native Blue Honeysuckle Populations in the Western and Eastern Eurasian Ranges.

ABSTRACT: Blue honeysuckle (Lonicera caerulea L.) is a promising berry crop producing edible early-ripening berries with a valuable chemical composition. We evaluated the genetic diversity of native L. caerulea populations from the western (Baltic states) and eastern (the Russian Far East and Japan) edges of the Eurasian range using inter-simple sequence repeat (ISSR) and chloroplast DNA (psbA-trnH and trnL-trnF) markers. The genetic relationships of populations and genotypes were analyzed using principal coordinate and cluster analyses (neighbor joining and Bayesian clustering). Sampling was carried out in two disjunct areas of this circumpolar species and the analyses showed clustering of individuals and populations according to geographic origin. The analysis of genetic structure based on ISSR markers showed that the studied populations of L. caerulea were highly differentiated. However, sequence analysis of two chloroplast DNA (cpDNA) regions revealed no phylogeographic structure among the populations. We also found that the eastern populations of blue honeysuckle had significantly greater genetic diversity parameters than the populations from the Baltic region. This finding correlates with the endangered status of blue honeysuckle in the Baltic states.

SUBMITTER: Naugzemys D

PROVIDER: S-EPMC9182990 | biostudies-literature | 2022 May

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Genetic Structure of Native Blue Honeysuckle Populations in the Western and Eastern Eurasian Ranges.

Naugžemys Donatas D Patamsytė Jolanta J Žilinskaitė Silva S Hoshino Yoichiro Y Skridaila Audrius A Žvingila Donatas D

Plants (Basel, Switzerland) 20220531 11

Blue honeysuckle (Lonicera caerulea L.) is a promising berry crop producing edible early-ripening berries with a valuable chemical composition. We evaluated the genetic diversity of native L. caerulea populations from the western (Baltic states) and eastern (the Russian Far East and Japan) edges of the Eurasian range using inter-simple sequence repeat (ISSR) and chloroplast DNA (psbA-trnH and trnL-trnF) markers. The genetic relationships of populations a ...[more]

PMID: 35684253

Similar Datasets

Project description:Understanding how large carnivores utilize space is crucial for management planning in human-dominated landscape and enhances the accuracy of population size estimates. However, Eurasian lynx display a large inter-population variation in the size of home ranges across their European range which makes extrapolation to broader areas of a species distribution problematic. This study evaluates variations in home range size for 35 Eurasian lynx in the Western Carpathians during 2011-2022 based on GPS telemetry and explains how intrinsic and environmental factors shape lynx spatial behaviour when facing anthropogenic pressure. The average annual home range size of lynx ranged from 283 (± 42 SE) to 360 (± 60 SE) km2 for males and from 148 (± 50 SE) to 190 (± 70 SE) km2 for females, depending on home range estimator (95% MCP, KDE and AKDE). Females with kittens had smaller annual and summer home ranges compared to non-reproducing females and subadults had smaller home ranges compared to adults. Lynx home range size was explained by availability of roe deer, except for summer, when alternative prey was likely available. We also found clear evidence of human-induced changes in lynx home range size, in particular, forest cover significantly decreased the home range size of male lynx during summer while road density led to an expansion of both annual and summer lynx home ranges. Lynx exhibited consistent fidelity to their home ranges throughout consecutive seasons, showing no seasonal variations. Strong territoriality was observed among competing males maintaining relatively low home range overlaps and considerable distances between centres of activity. The most pronounced tendency for association was observed between males and females, maintaining relatively close proximity year-round. The insights into lynx spatial requirements provided by our study will greatly enhance the accuracy of population size estimates and effectiveness of mitigation measures across the Western Carpathians.

Project description:Background and aimsDate palms (Phoenix dactylifera, Arecaceae) are of great economic and ecological value to the oasis agriculture of arid and semi-arid areas. However, despite the availability of a large date palm germplasm spreading from the Atlantic shores to Southern Asia, improvement of the species is being hampered by a lack of information on global genetic diversity and population structure. In order to contribute to the varietal improvement of date palms and to provide new insights on the influence of geographic origins and human activity on the genetic structure of the date palm, this study analysed the diversity of the species.MethodsGenetic diversity levels and population genetic structure were investigated through the genotyping of a collection of 295 date palm accessions ranging from Mauritania to Pakistan using a set of 18 simple sequence repeat (SSR) markers and a plastid minisatellite.Key resultsUsing a Bayesian clustering approach, the date palm genotypes can be structured into two different gene pools: the first, termed the Eastern pool, consists of accessions from Asia and Djibouti, whilst the second, termed the Western pool, consists of accessions from Africa. These results confirm the existence of two ancient gene pools that have contributed to the current date palm diversity. The presence of admixed genotypes is also noted, which points at gene flows between eastern and western origins, mostly from east to west, following a human-mediated diffusion of the species.ConclusionsThis study assesses the distribution and level of genetic diversity of accessible date palm resources, provides new insights on the geographic origins and genetic history of the cultivated component of this species, and confirms the existence of at least two domestication origins. Furthermore, the strong genetic structure clearly established here is a prerequisite for any breeding programme exploiting the effective polymorphism related to each gene pool.

Dataset Information

Genetic Structure of Native Blue Honeysuckle Populations in the Western and Eastern Eurasian Ranges.

Publications

Genetic Structure of Native Blue Honeysuckle Populations in the Western and Eastern Eurasian Ranges.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets