CircVIS: a platform for circRNA visual presentation.

ABSTRACT:

Background

The collection of circRNAs mostly focused on their sequence composition such as protein/miRNA binding motif, and/or regulatory elements such as internal ribosome entry site. However, less attention was paid to subcellular localization. CircVIS aimed to provide a collection of circRNAs with information of subcellular compartments and also integrated the circRNA entries from previous circRNA databases.

Results

A collection of circRNAs from public circRNA databases and de novo identification were annotated according to subcellular localizations including nucleoplasm, chromatin-associated parts, cytoplasm and polyribosome. All circRNAs were aligned to a selected major transcript, and if presence, the circRNA-derived open reading frame with annotation of functional dom

SUBMITTER: Lin YC 

PROVIDER: S-EPMC9185860 | biostudies-literature | 2022 Jun

REPOSITORIES: biostudies-literature