PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature.

ABSTRACT:

Background

Adverse events induced by drug-drug interactions are a major concern in the United States. Current research is moving toward using electronic health record (EHR) data, including for adverse drug events discovery. One of the first steps in EHR-based studies is to define a phenotype for establishing a cohort of patients. However, phenotype definitions are not readily available for all phenotypes. One of the first steps of developing automated text mining tools is building a corpus. Therefore, this study aimed to develop annotation guidelines and a gold standard corpus to facilitate building future automated approaches for mining phenotype definitions contained in the literature. Furthermore, our aim is to improve the understanding of how these published phenotype definitio

SUBMITTER: Binkheder S 

PROVIDER: S-EPMC9188713 | biostudies-literature | 2022 Jun

REPOSITORIES: biostudies-literature