Parameters from site classification to harmonize MRI clinical studies: Application to a multi-site Parkinson's disease dataset.

ABSTRACT: Multi-site MRI datasets are crucial for big data research. However, neuroimaging studies must face the batch effect. Here, we propose an approach that uses the predictive probabilities provided by Gaussian processes (GPs) to harmonize clinical-based studies. A multi-site dataset of 216 Parkinson's disease (PD) patients and 87 healthy subjects (HS) was used. We performed a site GP classification using MRI data. The outcomes estimated from this classification, redefined like Weighted HARMonization PArameters (WHARMPA), were used as regressors in two different clinical studies: A PD versus HS machine learning classification using GP, and a VBM comparison (FWE-p < .05, k = 100). Same studies were also conducted using conventional Boolean site covariates, and without information about site belo

SUBMITTER: C Monte-Rubio G 

PROVIDER: S-EPMC9188966 | biostudies-literature | 2022 Jul

REPOSITORIES: biostudies-literature