RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies.

ABSTRACT:

Motivation

Mapping positional features from one-dimensional (1D) sequences onto three-dimensional (3D) structures of biological macromolecules is a powerful tool to show geometric patterns of biochemical annotations and provide a better understanding of the mechanisms underpinning protein and nucleic acid function at the atomic level.

Results

We present a new library designed to display fully customizable interactive views between 1D positional features of protein and/or nucleic acid sequences and their 3D structures as isolated chains or components of macromolecular assemblies.

Availability and implementation

https://github.com/rcsb/rcsb-saguaro-3d.

Supplementary information

Supplementary data are available at Bioinformatics online.

SUBMITTER: Segura J 

PROVIDER: S-EPMC9191206 | biostudies-literature | 2022 Jun

REPOSITORIES: biostudies-literature