VisProDom: an interactive Shiny/R application for displaying protein domains with transcriptional features.

ABSTRACT:

Background

Both the protein domains and transcript structures influence protein functional variation. The genomic location of both protein domains and transcript structural features can be described using the genomic coordinates of their encoded sequences. However, the coordinates of protein domains and transcriptional features often differ greatly, and it is difficult to view them in combination at the genome-wide level. In this paper, we describe the development of a new tool that allows users to visualize domains and transcript features together, using either built-in or uploaded genome datasets, and export publication-ready figures.  RESULTS: We developed a user-friendly, independent R package and Shiny web application named "VisProDom". VisProDom consists of a genome-wide data

SUBMITTER: Wang H 

PROVIDER: S-EPMC9235191 | biostudies-literature | 2022 Jun

REPOSITORIES: biostudies-literature