Mapping the Complex Transcriptional Landscape of the Phytopathogenic Bacterium Dickeya dadantii.

ABSTRACT: Dickeya dadantii is a phytopathogenic bacterium that causes soft rot in a wide range of plant hosts worldwide and a model organism for studying virulence gene regulation. The present study provides a comprehensive and annotated transcriptomic map of D. dadantii obtained by a computational method combining five independent transcriptomic data sets: (i) paired-end RNA sequencing (RNA-seq) data for a precise reconstruction of the RNA landscape; (ii) DNA microarray data providing transcriptional responses to a broad variety of environmental conditions; (iii) long-read Nanopore native RNA-seq data for isoform-level transcriptome validation and determination of transcription termination sites; (iv) differential RNA sequencing (dRNA-seq) data for the precise mapping of transcription start

SUBMITTER: Forquet R 

PROVIDER: S-EPMC9239193 | biostudies-literature | 2022 Jun

REPOSITORIES: biostudies-literature