An accurate alignment-free protein sequence comparator based on physicochemical properties of amino acids.

ABSTRACT: Bio-sequence comparators are one of the most basic and significant methods for assessing biological data, and so, due to the importance of proteins, protein sequence comparators are particularly crucial. On the other hand, the complexity of the problem, the growing number of extracted protein sequences, and the growth of studies and data analysis applications addressing protein sequences have necessitated the development of a rapid and accurate approach to account for the complexities in this field. As a result, we propose a protein sequence comparison approach, called PCV, which improves comparison accuracy by producing vectors that encode sequence data as well as physicochemical properties of the amino acids. At the same time, by partitioning the long protein sequences into fix-length bl

SUBMITTER: Akbari Rokn Abadi S 

PROVIDER: S-EPMC9247937 | biostudies-literature | 2022 Jul

REPOSITORIES: biostudies-literature