WormBase single-cell tools.

ABSTRACT:

 

We present two web apps for interactively performing common tasks with single-cell RNA sequencing data: scdefg for differential expression and wormcells-viz for visualization of gene expression. We deployed these tools with public Caenorhabditis elegans datasets curated by WormBase at https://single-cell.wormbase.org. Source code for deploying these tools with other datasets is available at https://github.com/WormBase/scdefg and https://github.com/WormBase/wormcells-viz.

Supplementary information

Supplementary data are available at Bioinformatics Advances online.

SUBMITTER: da Veiga Beltrame E 

PROVIDER: S-EPMC9258504 | biostudies-literature | 2022

REPOSITORIES: biostudies-literature