GetSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories.

ABSTRACT:

Background

Biological sequences are increasing rapidly and exponentially worldwide. Nucleotide sequence databases play an important role in providing meaningful genomic information on a variety of biological organisms.

Results

The getSequenceInfo software tool allows to access sequence information from various public repositories (GenBank, RefSeq, and the European Nucleotide Archive), and is compatible with different operating systems (Linux, MacOS, and Microsoft Windows) in a programmatic way (command line) or as a graphical user interface. getSequenceInfo or gSeqI v1.0 should help users to get some information on queried sequences that could be useful for specific studies (e.g. the country of origin/isolation or the release date of queried sequences). Queries can be made t

SUBMITTER: Moco V 

PROVIDER: S-EPMC9264741 | biostudies-literature | 2022 Jul

REPOSITORIES: biostudies-literature