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GestaltMatcher facilitates rare disease matching using facial phenotype descriptors.


ABSTRACT: Many monogenic disorders cause a characteristic facial morphology. Artificial intelligence can support physicians in recognizing these patterns by associating facial phenotypes with the underlying syndrome through training on thousands of patient photographs. However, this 'supervised' approach means that diagnoses are only possible if the disorder was part of the training set. To improve recognition of ultra-rare disorders, we developed GestaltMatcher, an encoder for portraits that is based on a deep convolutional neural network. Photographs of 17,560 patients with 1,115 rare disorders were used to define a Clinical Face Phenotype Space, in which distances between cases define syndromic similarity. Here we show that patients can be matched to others with the same molecular diagnosis even when the disorder was not included in the training set. Together with mutation data, GestaltMatcher could not only accelerate the clinical diagnosis of patients with ultra-rare disorders and facial dysmorphism but also enable the delineation of new phenotypes.

SUBMITTER: Hsieh TC 

PROVIDER: S-EPMC9272356 | biostudies-literature | 2022 Mar

REPOSITORIES: biostudies-literature

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GestaltMatcher facilitates rare disease matching using facial phenotype descriptors.

Hsieh Tzung-Chien TC   Bar-Haim Aviram A   Moosa Shahida S   Ehmke Nadja N   Gripp Karen W KW   Pantel Jean Tori JT   Danyel Magdalena M   Mensah Martin Atta MA   Horn Denise D   Rosnev Stanislav S   Fleischer Nicole N   Bonini Guilherme G   Hustinx Alexander A   Schmid Alexander A   Knaus Alexej A   Javanmardi Behnam B   Klinkhammer Hannah H   Lesmann Hellen H   Sivalingam Sugirthan S   Kamphans Tom T   Meiswinkel Wolfgang W   Ebstein Frédéric F   Krüger Elke E   Küry Sébastien S   Bézieau Stéphane S   Schmidt Axel A   Peters Sophia S   Engels Hartmut H   Mangold Elisabeth E   Kreiß Martina M   Cremer Kirsten K   Perne Claudia C   Betz Regina C RC   Bender Tim T   Grundmann-Hauser Kathrin K   Haack Tobias B TB   Wagner Matias M   Brunet Theresa T   Bentzen Heidi Beate HB   Averdunk Luisa L   Coetzer Kimberly Christine KC   Lyon Gholson J GJ   Spielmann Malte M   Schaaf Christian P CP   Mundlos Stefan S   Nöthen Markus M MM   Krawitz Peter M PM  

Nature genetics 20220210 3


Many monogenic disorders cause a characteristic facial morphology. Artificial intelligence can support physicians in recognizing these patterns by associating facial phenotypes with the underlying syndrome through training on thousands of patient photographs. However, this 'supervised' approach means that diagnoses are only possible if the disorder was part of the training set. To improve recognition of ultra-rare disorders, we developed GestaltMatcher, an encoder for portraits that is based on  ...[more]

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