AC-PCoA: Adjustment for confounding factors using principal coordinate analysis.

ABSTRACT: Confounding factors exist widely in various biological data owing to technical variations, population structures and experimental conditions. Such factors may mask the true signals and lead to spurious associations in the respective biological data, making it necessary to adjust confounding factors accordingly. However, existing confounder correction methods were mainly developed based on the original data or the pairwise Euclidean distance, either one of which is inadequate for analyzing different types of data, such as sequencing data. In this work, we proposed a method called Adjustment for Confounding factors using Principal Coordinate Analysis, or AC-PCoA, which reduces data dimension and extracts the information from different distance measures using principal coordinate analysis, an

SUBMITTER: Wang Y 

PROVIDER: S-EPMC9278763 | biostudies-literature | 2022 Jul

REPOSITORIES: biostudies-literature