ScCloudMine: A cloud-based app for visualization, comparison, and exploration of single-cell transcriptomic data.

ABSTRACT: scCloudMine is a cloud-based application for visualization, comparison, and exploration of single-cell transcriptome data. It does not require an on-site, high-power computing server, installation, or associated expertise and expense. Users upload their own or publicly available scRNA-seq datasets after pre-processing for visualization using a web browser. The data can be viewed in two color modes-Cluster, representing cell identity, and Values, showing levels of expression-and data can be queried using keywords or gene identification number(s). Using the app to compare studies, we determined that some genes frequently used as cell-type markers are in fact study specific. The apparent cell-specific expression of PHO1;H3 differed between GFP-tagging and scRNA-seq studies. Some phosphate tra

SUBMITTER: Lewsey MG 

PROVIDER: S-EPMC9284053 | biostudies-literature | 2022 Jul

REPOSITORIES: biostudies-literature