Dataset Information

Diet analysis using generalized linear models derived from foraging processes using R package mvtweedie.

ABSTRACT: Diet analysis integrates a wide variety of visual, chemical, and biological identification of prey. Samples are often treated as compositional data, where each prey is analyzed as a continuous percentage of the total. However, analyzing compositional data results in analytical challenges, for example, highly parameterized models or prior transformation of data. Here, we present a novel approximation involving a Tweedie generalized linear model (GLM). We first review how this approximation emerges from considering predator foraging as a thinned and marked point process (with marks representing prey species and individual prey size). This derivation can motivate future theoretical and applied developments. We then provide a practical tutorial for the Tweedie GLM using new package mvtweedie that extends capabilities of widely used packages in R (mgcv and ggplot2) by transforming output to calculate prey compositions. We demonstrate this approach and software using two examples. Tufted Puffins (Fratercula cirrhata) provisioning their chicks on a colony in the northern Gulf of Alaska show decadal prey switching among sand lance and prowfish (1980-2000) and then Pacific herring and capelin (2000-2020), while wolves (Canis lupus ligoni) in southeast Alaska forage on mountain goats and marmots in northern uplands and marine mammals in seaward island coastlines.

SUBMITTER: Thorson JT

PROVIDER: S-EPMC9286827 | biostudies-literature | 2022 May

REPOSITORIES: biostudies-literature

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Diet analysis using generalized linear models derived from foraging processes using R package mvtweedie.

Thorson James T JT Arimitsu Mayumi L ML Levi Taal T Roffler Gretchen H GH

Ecology 20220316 5

Diet analysis integrates a wide variety of visual, chemical, and biological identification of prey. Samples are often treated as compositional data, where each prey is analyzed as a continuous percentage of the total. However, analyzing compositional data results in analytical challenges, for example, highly parameterized models or prior transformation of data. Here, we present a novel approximation involving a Tweedie generalized linear model (GLM). We first review how this approximation emerge ...[more]

PMID: 35060624

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Dataset Information

Diet analysis using generalized linear models derived from foraging processes using R package mvtweedie.

Publications

Diet analysis using generalized linear models derived from foraging processes using R package mvtweedie.

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