FishExp: A comprehensive database and analysis platform for gene expression and alternative splicing of fish species.

ABSTRACT: The publicly archived RNA-seq data has grown exponentially, while its valuable information has not yet been fully discovered and utilized, such as alternative splicing and its integration with gene expression. This is especially true for fish species which play important roles in ecology, research and the food industry. Furthermore, there is a lack of online platform to analyze users' new data individually and jointly with existing data for the comprehensive analysis of alternative splicing and gene expression. Here, we present FishExp, a web-based data platform covering gene expression and alternative splicing in 26,081 RNA-seq experiments from 44 fishes. It allows users to query the data in a variety of ways, including gene identifier/symbol, functional term, and BLAST alignment. Moreove

SUBMITTER: Tan S 

PROVIDER: S-EPMC9293738 | biostudies-literature | 2022

REPOSITORIES: biostudies-literature