ICOMIC: a graphical interface-driven bioinformatics pipeline for analyzing cancer omics data.

ABSTRACT: Despite the tremendous increase in omics data generated by modern sequencing technologies, their analysis can be tricky and often requires substantial expertise in bioinformatics. To address this concern, we have developed a user-friendly pipeline to analyze (cancer) genomic data that takes in raw sequencing data (FASTQ format) as input and outputs insightful statistics. Our iCOMIC toolkit pipeline featuring many independent workflows is embedded in the popular Snakemake workflow management system. It can analyze whole-genome and transcriptome data and is characterized by a user-friendly GUI that offers several advantages, including minimal execution steps and eliminating the need for complex command-line arguments. Notably, we have integrated algorithms developed in-house to predict patho

SUBMITTER: Anilkumar Sithara A 

PROVIDER: S-EPMC9310080 | biostudies-literature | 2022 Sep

REPOSITORIES: biostudies-literature