Compendious survey of protein tandem repeats in inbred mouse strains.

ABSTRACT: Short tandem repeats (STRs) play a crucial role in genetic diseases. However, classic disease models such as inbred mice lack such genome wide data in public domain. The examination of STR alleles present in the protein coding regions (are known as protein tandem repeats or PTR) can provide additional functional layer of phenotype regulars. Motivated with this, we analysed the whole genome sequencing data from 71 different mouse strains and identified STR alleles present within the coding regions of 562 genes. Taking advantage of recently formulated protein models, we also showed that the presence of these alleles within protein 3-dimensional space, could impact the protein folding. Overall, we identified novel alleles from a large number of mouse strains and demonstrated that these allele

SUBMITTER: Arslan A 

PROVIDER: S-EPMC9354378 | biostudies-literature | 2022 Aug

REPOSITORIES: biostudies-literature