ATAP: automated transcriptome analysis platform for processing RNA-seq data by de novo assembly.

ABSTRACT: RNA-seq is a sequencing technique that uses next-generation sequencing (NGS) to explore and study the entire transcriptome of a biological sample. NGS-based analyses are mostly performed via command-line interfaces, which is an obstacle for molecular biologists and researchers. Therefore, the higher throughputs from NGS can only be accessed with the help of bioinformatics and computer science expertise. As the cost of sequencing is continuously falling, the use of RNA-seq seems certain to increase. To minimize the problems encountered by biologists and researchers in RNA-seq data analysis, we propose an automated platform with a web application that integrates various bioinformatics pipelines. The platform is intended to enable academic users to more easily analyze transcriptome datasets.

SUBMITTER: Surachat K 

PROVIDER: S-EPMC9404342 | biostudies-literature | 2022 Aug

REPOSITORIES: biostudies-literature