Novel score test to increase power in association test by integrating external controls.

ABSTRACT: Recent advances in genotyping and sequencing technologies have enabled genetic association studies to leverage high-quality genotyped data to identify variants accounting for a substantial portion of disease risk. The usage of external controls, whose genomes have already been genotyped and are publicly available, could be a cost-effective approach to increase the power of association testing. There has been recent effort to integrate external controls while adjusting for possible batch effects, such as the integrating External Controls into Association Test (iECAT). The original iECAT test, however, cannot adjust for covariates such as age, gender, and so forth. Hence, based on the insight of iECAT, we propose a novel score-based test that allows for covariate adjustment and constructs a

SUBMITTER: Li Y 

PROVIDER: S-EPMC9424128 | biostudies-literature | 2021 Apr

REPOSITORIES: biostudies-literature