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The ATRX splicing variant c.21-1G>A is asymptomatic.


ABSTRACT: The ATRX variant c.21-1G>A was detected by an exome analysis of a patient with Cockayne syndrome without alpha thalassemia X-linked intellectual disability syndrome (ATR-XS). In addition, variants in ERCC6 were detected. ATRX c.21-1G>A is localized at the splicing acceptor site of intron 1. This splicing event, NM_000489.6: c.21_133del p.S7Rfs*1, induces exon 2 deletion and early termination. The start codon in exon 3 of ATRX is presumed to produce a slightly shorter but functional ATRX protein.

SUBMITTER: Kojima K 

PROVIDER: S-EPMC9474544 | biostudies-literature | 2022 Sep

REPOSITORIES: biostudies-literature

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The ATRX splicing variant c.21-1G>A is asymptomatic.

Kojima Karin K   Wada Takahito T   Shimbo Hiroko H   Ikeda Takahiro T   Jimbo Eriko F EF   Saitsu Hirotomo H   Matsumoto Naomichi N   Yamagata Takanori T  

Human genome variation 20220914 1


The ATRX variant c.21-1G>A was detected by an exome analysis of a patient with Cockayne syndrome without alpha thalassemia X-linked intellectual disability syndrome (ATR-XS). In addition, variants in ERCC6 were detected. ATRX c.21-1G>A is localized at the splicing acceptor site of intron 1. This splicing event, NM_000489.6: c.21_133del p.S7Rfs*1, induces exon 2 deletion and early termination. The start codon in exon 3 of ATRX is presumed to produce a slightly shorter but functional ATRX protein. ...[more]

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