BioTEA: Containerized Methods of Analysis for Microarray-Based Transcriptomics Data.

ABSTRACT: Tens of thousands of gene expression data sets describing a variety of model organisms in many different pathophysiological conditions are currently stored in publicly available databases such as the Gene Expression Omnibus (GEO) and ArrayExpress (AE). As microarray technology is giving way to RNA-seq, it becomes strategic to develop high-level tools of analysis to preserve access to this huge amount of information through the most sophisticated methods of data preparation and processing developed over the years, while ensuring, at the same time, the reproducibility of the results. To meet this need, here we present bioTEA (biological Transcript Expression Analyzer), a novel software tool that combines ease of use with the versatility and power of an R/Bioconductor-based differential expre

SUBMITTER: Visentin L 

PROVIDER: S-EPMC9495986 | biostudies-literature | 2022 Sep

REPOSITORIES: biostudies-literature