RNAStat: An Integrated Tool for Statistical Analysis of RNA 3D Structures.

ABSTRACT: The 3D architectures of RNAs are essential for understanding their cellular functions. While an accurate scoring function based on the statistics of known RNA structures is a key component for successful RNA structure prediction or evaluation, there are few tools or web servers that can be directly used to make comprehensive statistical analysis for RNA 3D structures. In this work, we developed RNAStat, an integrated tool for making statistics on RNA 3D structures. For given RNA structures, RNAStat automatically calculates RNA structural properties such as size and shape, and shows their distributions. Based on the RNA structure annotation from DSSR, RNAStat provides statistical information of RNA secondary structure motifs including canonical/non-canonical base pairs, stems, and various l

SUBMITTER: Guo ZH 

PROVIDER: S-EPMC9580920 | biostudies-literature | 2021

REPOSITORIES: biostudies-literature