Full-length transcriptome and analysis of bmp-related genes in Platypharodon extremus.

ABSTRACT: Platypharodon extremus is an endemic species on the Qinghai-Tibet Plateau. As a secondary protected species in China, the basic genomic information of this species has not yet been reported. Here, through third-generation sequencing, the full-length transcriptome of P. extremus was obtained. We identified 323,290 CCS sequences, and a total of 50,083 unigenes were extracted after correction with second-generation sequencing data and the removal of redundant reads. A total of 50,067 transcripts were annotated with the various databases. Based on the sequence information, three members in the bone morphogenetic proteins (bmps) family and their receptors, were identified. We found that the special structures of these proteins (zinc-dependent metalloproteinase domain, CUB domains,

SUBMITTER: Wu X 

PROVIDER: S-EPMC9582708 | biostudies-literature | 2022 Oct

REPOSITORIES: biostudies-literature