Unknown

Dataset Information

0

8-Oxoguanine Forms Quartets with a Large Central Cavity.


ABSTRACT: Oxidation of a guanine nucleotide in DNA yields an 8-oxoguanine nucleotide (oxoG) and is a mutagenic event in the genome. Due to different arrangements of hydrogen-bond donors and acceptors, oxoG can affect the secondary structure of nucleic acids. We have investigated base pairing preferences of oxoG in the core of a tetrahelical G-quadruplex structure, adopted by analogues of d(TG4T). Using spectroscopic methods, we have shown that G-quartets can be fully substituted with oxoG nucleobases to form an oxoG-quartet with a revamped hydrogen-bonding scheme. While an oxoG-quartet can be incorporated into the G-quadruplex core without distorting the phosphodiester backbone, larger dimensions of the central cavity change the cation localization and exchange properties.

SUBMITTER: Aleksic S 

PROVIDER: S-EPMC9631995 | biostudies-literature | 2022 Nov

REPOSITORIES: biostudies-literature

altmetric image

Publications

8-Oxoguanine Forms Quartets with a Large Central Cavity.

Aleksič Simon S   Podbevšek Peter P   Plavec Janez J  

Biochemistry 20221019 21


Oxidation of a guanine nucleotide in DNA yields an 8-oxoguanine nucleotide (<sup>oxo</sup>G) and is a mutagenic event in the genome. Due to different arrangements of hydrogen-bond donors and acceptors, <sup>oxo</sup>G can affect the secondary structure of nucleic acids. We have investigated base pairing preferences of <sup>oxo</sup>G in the core of a tetrahelical G-quadruplex structure, adopted by analogues of d(TG<sub>4</sub>T). Using spectroscopic methods, we have shown that G-quartets can be  ...[more]

Similar Datasets

| S-EPMC3141274 | biostudies-literature
| S-EPMC9943661 | biostudies-literature
| S-EPMC2682846 | biostudies-literature
| S-EPMC5732287 | biostudies-literature
| S-EPMC5714965 | biostudies-literature
| S-EPMC10311336 | biostudies-literature
| S-EPMC3169134 | biostudies-literature
| S-EPMC10110622 | biostudies-literature
| S-EPMC5634996 | biostudies-literature
| S-EPMC4892341 | biostudies-literature