Dataset Information

Characterization of a Novel Complete-Genome Sequence of a Galliform Chaphamaparvovirus from a Free-Range Laying Chicken Clinically Diagnosed with Spotty Liver Disease.

ABSTRACT: This study reports a novel complete genome of galliform chaphamaparvovirus 4, which was detected in the bile of a free-range laying chicken diagnosed with spotty liver disease. The genome was 4,367 bp in length, enclosed by two identical inverted terminal repeats. The detection of this novel chaphamaparvovirus represents a notable concern for the poultry industry in Australia.

SUBMITTER: Sarker S

PROVIDER: S-EPMC9670884 | biostudies-literature | 2022 Nov

REPOSITORIES: biostudies-literature

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Characterization of a Novel Complete-Genome Sequence of a Galliform Chaphamaparvovirus from a Free-Range Laying Chicken Clinically Diagnosed with Spotty Liver Disease.

Sarker Subir S

Microbiology resource announcements 20221027 11

This study reports a novel complete genome of galliform chaphamaparvovirus 4, which was detected in the bile of a free-range laying chicken diagnosed with spotty liver disease. The genome was 4,367 bp in length, enclosed by two identical inverted terminal repeats. The detection of this novel chaphamaparvovirus represents a notable concern for the poultry industry in Australia. ...[more]

PMID: 36301112

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Project description:BackgroundA newly uncovered parvovirus, Chaphamaparvovirus, continues to be reported across various species. This study investigated the detection and genetic characterization of Chaphamaparvovirus galliform (GaChpV) in poultry, specifically broilers and turkeys, from various regions in Türkiye. To address this, comprehensive sampling and analysis were conducted to better understand the virus's distribution and impact in these avian populations.ResultsIn 2023, a total of 1060 fecal samples were collected from 76 broiler flocks (10 healthy and 66 with enteritis) and 30 turkey flocks (10 healthy and 20 with enteritis). Using nested PCR with specific primer sets, the study detected GaChpV in 36 out of 76 broiler flocks (47.3%) and 2 out of 30 turkey flocks (6,6%). Although GaChpV was detected at notable frequencies, the analysis revealed no statistically significant association between GaChpV and enteritis cases (p = 0.617). In this study, the nucleotide sequences (nt) of the capsid genes from GaChpV strains isolated from broilers and turkeys were 99 to 100% identical. Furthermore, these strains exhibited a high degree of genetic similarity ranging from 73 to 98% to Chaphamaparvovirus galliform 2 (GaChpV-2) strains from Europe, China, and Brazil. Complete genome sequencing of a broiler strain (CkChPV/2023/UN-2-TR) yielded a genome of 4,229 nucleotides, with sequence identity ranging from 78.93 to 98.82% compared to other GaChpV strains. Phylogenetic analysis further revealed that the CkChPV/2023/UN-2-TR strain clustered with GaChpV-2 strains, highlighting its genetic relatedness and diversity within the GaChpV family. The study also investigated genetic recombination signals and identified potential B-cell linear epitopes, contributing to a better understanding of the virus's genetic diversity and antigenic characteristics.ConclusionsThis report represents the first detection of GaChpV in turkey and broiler flocks in Türkiye. Notably, research on this topic in turkeys is quite limited. The data derived from this study will contribute to elucidating the molecular epidemiology and evolutionary dynamics of GaChpV.

Project description:Enrichments during pullet rearing may improve adaptation and welfare of hens as they move from indoor rearing to a free-range system. Individual variation in outdoor ranging may also affect welfare. This study assessed the effects of rearing enrichments and an imposed environmental stressor on hen welfare and egg quality along with the association of welfare with ranging. Hy-Line Brown® chicks (n = 1,386) were reared indoors until 16 weeks with 3 enrichment treatments including a "control" group with standard floor litter, a "novelty" group that received novel objects that were changed weekly, and a "structural" group with H-shaped perching structures. Pullets were then moved to a free-range system with three replicates of each rearing treatment. Daily ranging was individually tracked from 25 to 64 weeks via radiofrequency identification technology. Individual hen welfare assessments were performed at 25, 33, 43, 56, and 64 weeks and correlated with ranging time prior to these dates. At 44 weeks, the range area was reduced by 80% for 11 days to induce stress. Changes in ranging behavior, albumen corticosterone concentrations and egg quality were evaluated. GLMMs showed significant interactions between hen age and rearing treatment for live weight, number of comb wounds, plumage coverage, and toenail length (all P ? 0.003), with the enriched hens showing more consistent live weight at the later ages, fewer comb wounds at 33 weeks, and better plumage coverage at the later ages, whereas the structural hens had shorter toenails as age increased. Plumage coverage showed a positive relationship with range use across most age points (P < 0.0001). Hens reduced ranging time following the imposed stressor but increased their number of visits with the lowest increase by the structural hens (P = 0.03). Significant interactions between rearing treatment and stressor for albumen corticosterone concentrations showed the structural hens decreased concentrations immediately post-stress, but the control and novelty groups increased (P < 0.006). The stressor increased or decreased values of most egg quality parameters across all rearing groups (all P ? 0.02). Overall, provision of rearing enrichments and greater range use may have positive impacts on hen welfare.

Dataset Information

Characterization of a Novel Complete-Genome Sequence of a Galliform Chaphamaparvovirus from a Free-Range Laying Chicken Clinically Diagnosed with Spotty Liver Disease.

Publications

Characterization of a Novel Complete-Genome Sequence of a Galliform Chaphamaparvovirus from a Free-Range Laying Chicken Clinically Diagnosed with Spotty Liver Disease.

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