Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The genome sequence of the tree wasp, Dolichovespula sylvestris Scopoli, 1763.

ABSTRACT: We present a genome assembly from an individual male Dolichovespula sylvestris (the tree wasp; Arthropoda; Insecta; Hymenoptera; Vespidae). The genome sequence is 233 megabases in span. The majority of the assembly (95.56%) is scaffolded into 26 chromosomal pseudomolecules. The mitochondrial genome was also assembled and is 21.3 kilobases in length.

SUBMITTER: Falk S

PROVIDER: S-EPMC9672531 | biostudies-literature | 2022

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The genome sequence of the tree wasp, Dolichovespula sylvestris Scopoli, 1763.

Falk Steven S Broad Gavin R GR

Wellcome open research 20220328

We present a genome assembly from an individual male Dolichovespula sylvestris (the tree wasp; Arthropoda; Insecta; Hymenoptera; Vespidae). The genome sequence is 233 megabases in span. The majority of the assembly (95.56%) is scaffolded into 26 chromosomal pseudomolecules. The mitochondrial genome was also assembled and is 21.3 kilobases in length. ...[more]

PMID: 36451628

Similar Datasets

The genome sequence of the tapered dronefly, Eristalis pertinax (Scopoli, 1763).

Project description:We present a genome assembly from an individual male Eristalis pertinax (the tapered dronefly; Arthropoda; Insecta; Diptera; Syriphidae). The genome sequence is 487 megabases in span. The majority of the assembly (95.23%) is scaffolded into seven chromosomal pseudomolecules, with the X and Y sex chromosomes assembled. The complete mitochondrial genome was also assembled and is 17.2 kilobases in length.

| S-EPMC9975435 | biostudies-literature

The genome sequence of the variegated flesh fly, Sarcophaga variegata (Scopoli, 1763).

Project description:We present a genome assembly from an individual male Sarcophaga variegata (the variegated flesh fly; Arthropoda; Insecta; Diptera; Sarcophagidae). The genome sequence is 718.5 megabases in span. Most of the assembly is scaffolded into 7 chromosomal pseudomolecules including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 18.7 kilobases in length. Gene annotation of this assembly on Ensembl identified 16,660 protein coding genes.

| S-EPMC10951566 | biostudies-literature

The genome sequence of the pale mottled willow, Caradrina clavipalpis (Scopoli, 1763).

Project description:We present a genome assembly from an individual male Caradrina clavipalpis (pale mottled willow; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 474 megabases in span. The entire assembly (100%) is scaffolded into 31 chromosomal pseudomolecules with the Z sex chromosome assembled. The complete mitochondrial genome was also assembled and is 15.6 kilobases in length.

| S-EPMC10043633 | biostudies-literature

The genome sequence of the White-barred Gold, Micropterix aruncella (Scopoli, 1763).

Project description:We present a genome assembly from an individual female Micropterix aruncella (the White-barred Gold; Arthropoda, Insecta, Lepidoptera; Micropterigidae). The genome sequence is 1,079 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the assembled Z sex chromosome. The mitochondrial genome has also been assembled and is 15.0 kilobases in length.

| S-EPMC10288161 | biostudies-literature

The genome sequence of the Common Carder Bee, Bombus pascuorum (Scopoli, 1763).

Project description:We present a genome assembly from an individual female Bombus pascuorum (the Common Carder Bee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 307.5 megabases in span. Most of the assembly is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 21.9 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,999 protein coding genes.

| S-EPMC10444996 | biostudies-literature

The genome sequence of the common red soldier beetle, Rhagonycha fulva (Scopoli, 1763).

Project description:We present a genome assembly from an individual female Rhagonycha fulva (the common red soldier beetle; Arthropoda; Insecta; Coleoptera; Cantharidae). The genome sequence is 425 megabases in span. The majority of the assembly is scaffolded into seven chromosomal pseudomolecules, with the X sex chromosome assembled.

| S-EPMC9363978 | biostudies-literature

The genome sequence of the Wasp Spider, Argiope bruennichi (Scopoli, 1772).

Project description:We present a genome assembly from an individual female Argiope bruennichi (the Wasp Spider; Arthropoda; Arachnida; Araneae; Araneidae). The genome sequence is 1,778.4 megabases in span. Most of the assembly is scaffolded into 13 chromosomal pseudomolecules, including the X 1 and X 2 sex chromosomes. The mitochondrial genome has also been assembled and is 14.06 kilobases in length.

| S-EPMC10904950 | biostudies-literature

The genome sequence of the Twin-spot Plume, Stenoptilia bipunctidactyla (Scopoli, 1763) [version 1; peer review: 2 approved]

Project description: Not available

| S-EPMC10548107 | biostudies-literature

Complete mitochondrial genome of Hypomecis punctinalis Scopoli, 1763 and its phylogenetic position within family Geometridae.

Project description:Hypomecis punctinalis Scopoli, 1763 belongs to the Lepidopteran family Geometridae. We sequenced the complete mitochondrial genome (mitogenome) of H. punctinalis. The mitogenome is 15,648 bp long and contains a typical set of genes (13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes) and a 484 bp AT-rich region. All PCGs start with ATN codons and stop at TAA codon except for cox1 using CGA as initiation codon and nad4 and nad5 using incomplete termination codon T. Within the mitogenome, 17 intergenic spacers and seven overlaps are founded. The intergenic nucleotides are 294 bp in total and two longest intervals locate between trnGln and nad2 as well as trnCys and trnTyr . The overlap nucleotides are 47 bp in total and the maximum overlap lies between cox2 and trnLys . The AT-rich region of the mitogenome contains an 'ATAGA + polyT' motif, three copies of 30-bp-repeat and a short polyA tail. The phylogenetic tree shows the relationships of four subfamilies of Geometridae are (((Ennominae + Geometrinae)+Larentiinae)+Sterrhinae)) and the relationships within subfamily Ennominae are ((((Erannis+Biston)+(Jankowskia+(Hypomecis+(Apocheima+Milionia))))+Ectropis)+Abraxas)+Phthonandria)+Celenna).

| S-EPMC8451619 | biostudies-literature

Complete mitochondrial genome of the Woodland Brown, Lopinga achine Scopoli, 1763 (Nymphalidae: Satyrinae) and its phylogenetic analysis.

Project description:In this study, the complete mitochondrial genome (mitogenome) of the Woodland Brown, Lopinga achine Scopoli, 1763 (Nymphalidae: Satyrinae) was determined to be 15,284 bp in size, including 37 typical mitochondrial genes and a control region. The gene content and arrangement of the mitogenome are identical to that of the majority of other sequenced nymphalids. All protein-coding genes (PCGs) are started with the conventional ATN codons, except for cox1 gene which is initiated by atypical CGA(R) codon. Nine PCGs use a typical stop codon of TAA, whereas the remaining PCGs (cox1, cox2, nad4, nad5) end with an incomplete T. The length of rrnL and rrnS are 1333 and 755 bp, respectively, separated by trnV. The phylogenetic tree inferred with Bayesian inference method reveals the phylogenetic relationships among the four tribes of Satyrinae analyzed as ((Satyrini + Melanitini) + (Elymniini + Amathusiini)). The newly sequenced species L. achine was clustered together with other two species of Parargina and formed a sister group with two species of the genus Lethe within Satyrini.

| S-EPMC9068012 | biostudies-literature