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Making Common Fund data more findable: catalyzing a data ecosystem.


ABSTRACT: The Common Fund Data Ecosystem (CFDE) has created a flexible system of data federation that enables researchers to discover datasets from across the US National Institutes of Health Common Fund without requiring that data owners move, reformat, or rehost those data. This system is centered on a catalog that integrates detailed descriptions of biomedical datasets from individual Common Fund Programs' Data Coordination Centers (DCCs) into a uniform metadata model that can then be indexed and searched from a centralized portal. This Crosscut Metadata Model (C2M2) supports the wide variety of data types and metadata terms used by individual DCCs and can readily describe nearly all forms of biomedical research data. We detail its use to ingest and index data from 11 DCCs.

SUBMITTER: Charbonneau AL 

PROVIDER: S-EPMC9677336 | biostudies-literature | 2022 Nov

REPOSITORIES: biostudies-literature

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Making Common Fund data more findable: catalyzing a data ecosystem.

Charbonneau Amanda L AL   Brady Arthur A   Czajkowski Karl K   Aluvathingal Jain J   Canchi Saranya S   Carter Robert R   Chard Kyle K   Clarke Daniel J B DJB   Crabtree Jonathan J   Creasy Heather H HH   D'Arcy Mike M   Felix Victor V   Giglio Michelle M   Gingrich Alicia A   Harris Rayna M RM   Hodges Theresa K TK   Ifeonu Olukemi O   Jeon Minji M   Kropiwnicki Eryk E   Lim Marisa C W MCW   Liming R Lee RL   Lumian Jessica J   Mahurkar Anup A AA   Mandal Meisha M   Munro James B JB   Nadendla Suvarna S   Richter Rudyard R   Romano Cia C   Rocca-Serra Philippe P   Schor Michael M   Schuler Robert E RE   Tangmunarunkit Hongsuda H   Waldrop Alex A   Williams Cris C   Word Karen K   Sansone Susanna-Assunta SA   Ma'ayan Avi A   Wagner Rick R   Foster Ian I   Kesselman Carl C   Brown C Titus CT   White Owen O  

GigaScience 20221101


The Common Fund Data Ecosystem (CFDE) has created a flexible system of data federation that enables researchers to discover datasets from across the US National Institutes of Health Common Fund without requiring that data owners move, reformat, or rehost those data. This system is centered on a catalog that integrates detailed descriptions of biomedical datasets from individual Common Fund Programs' Data Coordination Centers (DCCs) into a uniform metadata model that can then be indexed and searc  ...[more]

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