Dataset Information

Latent trajectories of frailty and risk prediction models among geriatric community dwellers: an interpretable machine learning perspective.

ABSTRACT:

Background

This study aimed to identify long-term frailty trajectories among older adults (≥65) and construct interpretable prediction models to assess the risk of developing abnormal frailty trajectory among older adults and examine significant factors related to the progression of frailty.

Methods

This study retrospectively collected data from the Chinese Longitudinal Healthy Longevity and Happy Family Study between 2002 and 2018 (N = 4083). Frailty was defined by the frailty index. The whole study consisted of two phases of tasks. First, group-based trajectory modeling was used to identify frailty trajectories. Second, easy-to-access epidemiological data was utilized to construct machine learning algorithms including naïve bayes, logistic regression, decision tree, support vector machine, random forest, artificial neural network, and extreme gradient boosting to predict the risk of long-term frailty trajectories. Further, Shapley additive explanations was employed to identify feature importance and open-up the black box model of machine learning to further strengthen decision makers' trust in the model.

Results

Two distinct frailty trajectories (stable-growth: 82.54%, rapid-growth: 17.46%) were identified. Compared with other algorithms, random forest performed relatively better in distinguishing the stable-growth and rapid-growth groups. Physical function including activities of daily living and instrumental activities of daily living, marital status, weight, and cognitive function were top five predictors.

Conclusions

Interpretable machine learning can achieve the primary goal of risk stratification and make it more transparent in individual prediction beneficial to primary screening and tailored prevention.

SUBMITTER: Wu Y

PROVIDER: S-EPMC9700973 | biostudies-literature | 2022 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Latent trajectories of frailty and risk prediction models among geriatric community dwellers: an interpretable machine learning perspective.

Wu Yafei Y Jia Maoni M Xiang Chaoyi C Fang Ya Y

BMC geriatrics 20221124 1

<h4>Background</h4>This study aimed to identify long-term frailty trajectories among older adults (≥65) and construct interpretable prediction models to assess the risk of developing abnormal frailty trajectory among older adults and examine significant factors related to the progression of frailty.<h4>Methods</h4>This study retrospectively collected data from the Chinese Longitudinal Healthy Longevity and Happy Family Study between 2002 and 2018 (N = 4083). Frailty was defined by the frailty in ...[more]

PMID: 36434518

Similar Datasets

Project description:Background and purposeMechanical thrombectomy greatly improves stroke outcomes. Nonetheless, some patients fall short of full recovery despite good reperfusion. The purpose of this study was to develop machine learning (ML) models for the pre-interventional prediction of functional outcome at 3 months of thrombectomy in acute ischemic stroke (AIS), using clinical and auto-extractable radiological information consistently available upon first emergency evaluation.Materials and methodsA two-center retrospective cohort of 293 patients with AIS who underwent thrombectomy was analyzed. ML models were developed to predict dichotomized modified Rankin score at 90 days (mRS-90) using clinical and imaging features, both separately and combined. Conventional and experimental imaging biomarkers were quantified using automated image-processing software from non-contract computed tomography (CT) and computed tomography angiography (CTA). Shapley Additive Explanation (SHAP) was applied for model interpretability and predictor importance analysis of the optimal model.ResultsMerging clinical and imaging features returned the best results for mRS-90 prediction. The best performing classifier was Extreme Gradient Boosting (XGB) with an area under the receiver operating characteristic curve (AUC) = 84% using selected features. The most important classifying features were age, baseline National Institutes of Health Stroke Scale (NIHSS), occlusion side, degree of brain atrophy [primarily represented by cortical cerebrospinal fluid (CSF) volume and lateral ventricle volume], early ischemic core [primarily represented by e-Alberta Stroke Program Early CT Score (ASPECTS)], and collateral circulation deficit volume on CTA.ConclusionMachine learning that is applied to quantifiable image features from CT and CTA alongside basic clinical characteristics constitutes a promising automated method in the pre-interventional prediction of stroke prognosis. Interpretable models allow for exploring which initial features contribute the most to post-thrombectomy outcome prediction overall and for each individual patient outcome.

Project description:BackgroundEstablished prognostic models of idiopathic membranous nephropathy (IMN) were limited to traditional modeling methods and did not comprehensively consider clinical and pathological patient data. Based on the electronic medical record (EMR) system, machine learning (ML) was used to construct a risk prediction model for the prognosis of IMN.MethodsData from 418 patients with IMN were diagnosed by renal biopsy at the Fifth Clinical Medical College of Shanxi Medical University. Fifty-nine medical features of the patients could be obtained from EMR, and prediction models were established based on five ML algorithms. The area under the curve, recall rate, accuracy, and F1 were used to evaluate and compare the performances of the models. Shapley additive explanation (SHAP) was used to explain the results of the best-performing model.ResultsOne hundred and seventeen patients (28.0%) with IMN experienced adverse events, 28 of them had compound outcomes (ESRD or double serum creatinine (SCr)), and 89 had relapsed. The gradient boosting machine (LightGBM) model had the best performance, with the highest AUC (0.892 ± 0.052, 95% CI 0.840-0.945), accuracy (0.909 ± 0.016), recall (0.741 ± 0.092), precision (0.906 ± 0.027), and F1 (0.905 ± 0.020). Recursive feature elimination with random forest and SHAP plots based on LightGBM showed that anti-phospholipase A2 receptor (anti-PLA2R), immunohistochemical immunoglobulin G4 (IHC IgG4), D-dimer (D-DIMER), triglyceride (TG), serum albumin (ALB), aspartate transaminase (AST), β2-microglobulin (BMG), SCr, and fasting plasma glucose (FPG) were important risk factors for the prognosis of IMN. Increased risk of adverse events in IMN patients was correlated with high anti-PLA2R and low IHC IgG4.ConclusionsThis study established a risk prediction model for the prognosis of IMN using ML based on clinical and pathological patient data. The LightGBM model may become a tool for personalized management of IMN patients.

Dataset Information

Latent trajectories of frailty and risk prediction models among geriatric community dwellers: an interpretable machine learning perspective.

Background

Methods

Results

Conclusions

Publications

Latent trajectories of frailty and risk prediction models among geriatric community dwellers: an interpretable machine learning perspective.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets