Evidente-a visual analytics tool for data enrichment in SNP-based phylogenetic trees.

ABSTRACT:

Motivation

A common practice in the analysis of pathogens and their strains is using single-nucleotide polymorphisms (SNPs) to reconstruct their evolutionary history. However, genome-wide SNP-based phylogenetic trees are rarely analyzed without any further information. Including the underlying SNP data together with further metadata on the respective samples in the exploration process can facilitate linking the genomic and phenotypic properties of the samples.

Results

We introduce Efficient VIsual analytics tool for Data ENrichment in phylogenetic TreEs (Evidente), a web-application that provides an interactive visual analysis interface for the simultaneous interrogation of phylogenetic relationships, genome-wide SNP data and metadata for samples of an organism. Besides visu

SUBMITTER: Witte Paz M 

PROVIDER: S-EPMC9710622 | biostudies-literature | 2022

REPOSITORIES: biostudies-literature